Capture to Endnote Stand Alone - and Transfer: Is there a better way

Capture to the Desktop version seems kludgy compared to the Capture to Web that is much more seamless.

Right now, I have to Capture to Endnote Web, then transfer it to Endnote Desktop to avoid having to read in individual downloaded files.

Is there a better way?

Is there a way to set Transfer so that by default, the “allow duplicates” and “transfer attachments” are not automatically checked?