OK, but I have the same original problem. I have a fairly large document created by combining several smaller ones. Each one was created using different EndNote Libraries (different co-authors). So now the full document bibliography does not have the correct order. It should be in the order the citations appear in the text, but it’s not. For example, the first citation in the document is not [1], instead it’s [10]. The citation numbers do match up correctly to the Bibliography numbers. But I can’t get it to re-order properly.