Canadian Common CV - Import from EndNote

Hello everyone, 

Me and a few colleagues have been using EndNote (X5 and now X7) for a while, and through the years have accumulated a few citations (that we have managed to put all togoether in one nice DB that we share). 

For grant applicaiton, the canadian government now uses the Canadian Common CV. I don’t want to type in the 3-4 pages of references into their own version of a databse. They offer “import from file” and the formats supported are PubMed, Citeulike, DBLP, Google Scholar, IEEE Xplore, Plos and Scopus.

Question: Can I find a way to export to one of those formats (pref. Scopus) from a selection of references in my EndNoteX7 DB ?

Seriously, please, there has to be a way…

Thank you all,

Marc

Not sure.  I know that the NIH version only lets us import from Pubmed and others need to be hand entered!  A real pain in the neck.  Cobbled information I gleaned from googling, is below.  (perhaps my multiauthored paper wasn’t the best example to choose though!)

It looks like all the import “versions” you listed  are exported as xml or bibtex files  – Endnote does have a bibtex (and an propritory xml) and comparing the one that comes out of Scopus and the endnote bibtex, there are differences, but I would think that it could be adapted.  You might ask in the Styles, Filters, and Connections Forum, or try a little diy modifying the bibtex output style (it is attached) (see here) or request one directly from support  http://endnote.com/downloads/output-style-request .  

  

I found that importing from Endnote may be an enhancement they are considering (but it may have been out of date wishful thinking, since it said only PubMed was possible) on the U Calgary website.    

I found the below here

Note: The CCV has introduced the ability to import publications from external bibliographic databases. It supports a web-based and a file-based import. The web-based import is limited to PubMed. The file-based import is limited to XML and BibTeX formats and we support the following databases:

  • PubMed - XML
  • Citeulike - BibTeX
  • DBLP - BibTeX
  • Google Scholar - BibTeX
  • IEEE Xplore - BibTeX
  • Plos - BibTeX
  • Scopus - BibTeX
  • Web of Science – BibTeX

For more detailed instructions, consult the demos:

https://ccv-cvc.ca/info_en/demos/ImportPublicationWeb.swf

https://ccv-cvc.ca/info_en/demos/ImportPublicationFile.swf

Below are two records from a scopus downloaded bibtex file:  

Scopus
EXPORT DATE: 14 July 2015

@ARTICLE{Smith2013415,
author={Smith, J.J. and Kuraku, S. and Holt, C. and Sauka-Spengler, T. and Jiang, N. and Campbell, M.S. and Yandell, M.D. and Manousaki, T. and Meyer, A. and Bloom, O.E. and Morgan, J.R. and Buxbaum, J.D. and Sachidanandam, R. and Sims, C. and Garruss, A.S. and Cook, M. and Krumlauf, R. and Wiedemann, L.M. and Sower, S.A. and Decatur, W.A. and Hall, J.A. and Amemiya, C.T. and Saha, N.R. and Buckley, K.M. and Rast, J.P. and Das, S. and Hirano, M. and McCurley, N. and Guo, P. and Rohner, N. and Tabin, C.J. and Piccinelli, P. and Elgar, G. and Ruffier, M. and Aken, B.L. and Searle, S.M.J. and Muffato, M. and Pignatelli, M. and Herrero, J. and Jones, M. and Brown, C.T. and Chung-Davidson, Y.-W. and Nanlohy, K.G. and Libants, S.V. and Yeh, C.-Y. and McCauley, D.W. and Langeland, J.A. and Pancer, Z. and Fritzsch, B. and De Jong, P.J. and Zhu, B. and Fulton, L.L. and Theising, B. and Flicek, P. and Bronner, M.E. and Warren, W.C. and Clifton, S.W. and Wilson, R.K. and Li, W.},
title={Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution},
journal={Nature Genetics},
year={2013},
volume={45},
number={4},
pages={415-421},
doi={10.1038/ng.2568},
note={cited By 97},
url={http://www.scopus.com/inward/record.url?eid=2-s2.0-84875692135&partnerID=40&md5=c7134ad8946c0200653c96877c8afd9f},
document_type={Article},
source={Scopus},
}

@ARTICLE{Wang20096074,
author={Wang, P. and Lin, C. and Smith, E.R. and Guo, H. and Sanderson, B.W. and Wu, M. and Gogol, M. and Alexander, T. and Seidel, C. and Wiedemann, L.M. and Ge, K. and Krumlauf, R. and Shilatifard, A.},
title={Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II},
journal={Molecular and Cellular Biology},
year={2009},
volume={29},
number={22},
pages={6074-6085},
doi={10.1128/MCB.00924-09},
note={cited By 131},
url={http://www.scopus.com/inward/record.url?eid=2-s2.0-71949107301&partnerID=40&md5=4b67277878b58096e403b00f28e3cbf1},
document_type={Article},
source={Scopus},
}

Compared to Endnotes export of its bibtex .  

@article{LMW6962XX,

   author = {Smith, J. J. and Kuraku, S. and Holt, C. and Sauka-Spengler, T. and Jiang, N. and Campbell, M. S. and Yandell, M. D. and Manousaki, T. and Meyer, A. and Bloom, O. E. and Morgan, J. R. and Buxbaum, J. D. and Sachidanandam, R. and Sims, C. and Garruss, A. S. and Cook, M. and Krumlauf, R. and Wiedemann, L. M. and Sower, S. A. and Decatur, W. A. and Hall, J. A. and Amemiya, C. T. and Saha, N. R. and Buckley, K. M. and Rast, J. P. and Das, S. and Hirano, M. and McCurley, N. and Guo, P. and Rohner, N. and Tabin, C. J. and Piccinelli, P. and Elgar, G. and Ruffier, M. and Aken, B. L. and Searle, S. M. and Muffato, M. and Pignatelli, M. and Herrero, J. and Jones, M. and Brown, C. T. and Chung-Davidson, Y. W. and Nanlohy, K. G. and Libants, S. V. and Yeh, C. Y. and McCauley, D. W. and Langeland, J. A. and Pancer, Z. and Fritzsch, B. and de Jong, P. J. and Zhu, B. and Fulton, L. L. and Theising, B. and Flicek, P. and Bronner, M. E. and Warren, W. C. and Clifton, S. W. and Wilson, R. K. and Li, W.},

   title = {Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution},

   journal = {Nat Genet},

   volume = {45},

   number = {4},

   pages = {415-21},

   note = {Smith, Jeramiah J

Kuraku, Shigehiro

Holt, Carson

Sauka-Spengler, Tatjana

Jiang, Ning

Campbell, Michael S

Yandell, Mark D

Manousaki, Tereza

Meyer, Axel

Bloom, Ona E

Morgan, Jennifer R

Buxbaum, Joseph D

Sachidanandam, Ravi

Sims, Carrie

Garruss, Alexander S

Cook, Malcolm

Krumlauf, Robb

Wiedemann, Leanne M

Sower, Stacia A

Decatur, Wayne A

Hall, Jeffrey A

Amemiya, Chris T

Saha, Nil R

Buckley, Katherine M

Rast, Jonathan P

Das, Sabyasachi

Hirano, Masayuki

McCurley, Nathanael

Guo, Peng

Rohner, Nicolas

Tabin, Clifford J

Piccinelli, Paul

Elgar, Greg

Ruffier, Magali

Aken, Bronwen L

Searle, Stephen M J

Muffato, Matthieu

Pignatelli, Miguel

Herrero, Javier

Jones, Matthew

Brown, C Titus

Chung-Davidson, Yu-Wen

Nanlohy, Kaben G

Libants, Scot V

Yeh, Chu-Yin

McCauley, David W

Langeland, James A

Pancer, Zeev

Fritzsch, Bernd

de Jong, Pieter J

Zhu, Baoli

Fulton, Lucinda L

Theising, Brenda

Flicek, Paul

Bronner, Marianne E

Warren, Wesley C

Clifton, Sandra W

Wilson, Richard K

Li, Weiming

DE017911/DE/NIDCR NIH HHS/

F32 GM087919/GM/NIGMS NIH HHS/

F32GM087919/GM/NIGMS NIH HHS/

GM079492/GM/NIGMS NIH HHS/

GM090049/GM/NIGMS NIH HHS/

MOP74667/Canadian Institutes of Health Research/Canada

R01 DE017911/DE/NIDCR NIH HHS/

R01 GM090049/GM/NIGMS NIH HHS/

R01 HG004694/HG/NHGRI NIH HHS/

R01HG004694/HG/NHGRI NIH HHS/

R03 NS078519/NS/NINDS NIH HHS/

R03NS078519/NS/NINDS NIH HHS/

R21 GM079492/GM/NIGMS NIH HHS/

R24 GM083982/GM/NIGMS NIH HHS/

R24 GM095471/GM/NIGMS NIH HHS/

R24 RR014085/RR/NCRR NIH HHS/

R24GM83982/GM/NIGMS NIH HHS/

R37 HD032443/HD/NICHD NIH HHS/

R37HD032443/HD/NICHD NIH HHS/

RR014085/RR/NCRR NIH HHS/

T32HG00035/HG/NHGRI NIH HHS/

U54 HG003079/HG/NHGRI NIH HHS/

U54HG003079/HG/NHGRI NIH HHS/

WT095908/Wellcome Trust/United Kingdom

WT098051/Wellcome Trust/United Kingdom

Research Support, N.I.H., Extramural

Research Support, Non-U.S. Gov’t

Research Support, U.S. Gov’t, Non-P.H.S.

Nat Genet. 2013 Apr;45(4):415-21, 421e1-2. doi: 10.1038/ng.2568. Epub 2013 Feb 24.},

   abstract = {Lampreys are representatives of an ancient vertebrate lineage that diverged from our own approximately 500 million years ago. By virtue of this deeply shared ancestry, the sea lamprey (P. marinus) genome is uniquely poised to provide insight into the ancestry of vertebrate genomes and the underlying principles of vertebrate biology. Here, we present the first lamprey whole-genome sequence and assembly. We note challenges faced owing to its high content of repetitive elements and GC bases, as well as the absence of broad-scale sequence information from closely related species. Analyses of the assembly indicate that two whole-genome duplications likely occurred before the divergence of ancestral lamprey and gnathostome lineages. Moreover, the results help define key evolutionary events within vertebrate lineages, including the origin of myelin-associated proteins and the development of appendages. The lamprey genome provides an important resource for reconstructing vertebrate origins and the evolutionary events that have shaped the genomes of extant organisms.},

   keywords = {Animals

*Chromosome Mapping

*Evolution, Molecular

*Genome

Petromyzon/*genetics

Phylogeny

Repetitive Sequences, Nucleic Acid

Sequence Analysis, DNA

Vertebrates/*genetics BCR},

   ISSN = {1546-1718 (Electronic)

1061-4036 (Linking)},

   DOI = {10.1038/ng.2568},

   url = {http://www.ncbi.nlm.nih.gov/pubmed/23435085},

   year = {2013},

   type = {Journal Article}

}

@article{LMW6529XX,

   author = {Wang, P. and Lin, C. and Smith, E. R. and Guo, H. and Sanderson, B. W. and Wu, M. and Gogol, M. and Alexander, T. and Seidel, C. and Wiedemann, L. M. and Ge, K. and Krumlauf, R. and Shilatifard, A.},

   title = {Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II},

   journal = {Mol Cell Biol},

   volume = {29},

   number = {22},

   pages = {6074-85},

   note = {Wang, Pengfei

Lin, Chengqi

Smith, Edwin R

Guo, Hong

Sanderson, Brian W

Wu, Min

Gogol, Madelaine

BibTeX Export.ens (40.6 KB)