Footnotes appearing as ibid instead of author, book title..etc. in second chapter

My only suggestion would be to format using the one that gives you the correct bibliography, and then to copy and paste the bibliography into a copy of the document where you choose the 2nd option, which gives you the right footnotes?  

and to make a suggestion to the developers to give you a 4th option in the future (although that won’t be quick).  You can do that by going to the suggestions section of the forum,  and perhaps copying the link to this discussion for clarity.  

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