Reference type and sort order

Hello. I am using Word 2016, EndNote X9 and the Chicago 17th footnote bibliography style.

I am using the Manuscript reference type where I have made entries in the author, title and collection title fields.

The bibliography generates properly and in order.

However, in Word 2016 - EndNote - Categorize References - Configure categories, these references do not show up.

I have a similar problem when I enter details in the Book reference under title. I think EndNote considers these as duplicates. (where the title details are the same).

Is there a work around in the Manuscript reference type? I have noticed that if I put the details in other fields and edit the style, the bibliography does not sort in the correct order.

I would appreciate any help. Thank you.