The manuscript is pulling the information from the travelling library and not from your Endnote library. The easiest way to fix it, is to unformat the references and reformat them. It will now no longer find a match to the offending reference(s) and ask you which one to replace it with. – If it is just that one causing the problem, you can delete it and reinsert it. Unformating all of them just makes sure there aren’t any others that have similar disconnects with the library.